PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28070_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 159aa    MW: 16947.8 Da    PI: 10.865
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28070_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP104.95.7e-3370140178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC +dl++ak y++rh+vC +hsk+p+v+v+g+eqr       fh+l+efD ekrsCrrrLa+hnerrrk+q+
  RrC28070_p1  70 RCQVEGCGMDLTNAKGYYSRHRVCGMHSKTPKVTVAGIEQR-------FHQLQEFDLEKRSCRRRLAGHNERRRKPQP 140
                  6**************************************97.......7**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.3E-2563125IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.27368138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.67E-3269142IPR004333Transcription factor, SBP-box
PfamPF031102.4E-2271137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MNMGSNSGQG RGPGQAESGG SSNESSSFSG GLMFGQKIYF EDGGGGSSSS GGSNRRVRGG  60
GSGQSSPIPR CQVEGCGMDL TNAKGYYSRH RVCGMHSKTP KVTVAGIEQR FHQLQEFDLE  120
KRSCRRRLAG HNERRRKPQP ASLSVLSSRF GRIAPSLYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2361137184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6183191e-104KC618319.1 Cardamine flexuosa SPL9 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744979.19e-83PREDICTED: squamosa promoter-binding-like protein 9
RefseqXP_009142046.11e-82PREDICTED: squamosa promoter-binding-like protein 9
SwissprotQ700W22e-75SPL9_ARATH; Squamosa promoter-binding-like protein 9
TrEMBLM4DK631e-82M4DK63_BRARP; Uncharacterized protein
STRINGBra016891.1-P3e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-68squamosa promoter binding protein-like 9